TripLexicon: the database of RNA:DNA:DNA triple helix formation powered by TriplexAligner

• About TripLexicon
  • What is an RNA:DNA:DNA triplex?
  • Prediction of RNA:DNA:DNA triplexes with TriplexAligner
  • What information does TripLexicon hold?
    • GRCh38/GRCm39 promoter regions (+2000,-500 base pairs from annotated transcription start site)
    • EpiRegio regulatory elements
    • Mouse enhancers called from ENCODE ATAC-sequencing data
    • GENCODE v45 / Ensembl release 112 (human) and GENCODE vM35 lncRNAs
• Example TripLexicon queries
  • Querying by RNA
    • Summary query by RNA gene symbol
    • Extended query by RNA gene symbol
    • Extended query by RNA transcript ID
  • Querying by predicted target gene
  • Querying by a genomic region
    • Single region
    • Multiple regions
• References